Topological Data Analysis for Biological Images and Video

Abstract: I will present the results of two projects applying topological data analysis (TDA) and machine learning (ML) to biological data. In the first, we have developed a new tool, TDAExplore, that combines TDA and ML to both classify biological images and to provide a visualization that is biologically informative. In the second, we use TDA and ML to classify quasi-periodic biological videos and we apply TDA to such a video to produce synthetic periodic videos.

geometric topology

Audience: researchers in the topic

GEOTOP-A seminar

Series comments: Web-seminar series on Applications of Geometry and Topology